Pairwise Alignments

Query, 184 a.a., ribosome maturation factor RimM from Vibrio cholerae E7946 ATCC 55056

Subject, 178 a.a., 16S rRNA processing protein RimM from Bacteroides stercoris CC31F

 Score = 48.5 bits (114), Expect = 6e-11
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 19/177 (10%)

Query: 9   MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFD-----YSPWYIDQKGEWVEYKVE 63
           M ++ E   +G     +GI G L  F++TD+   IFD     Y    +D  G +V + +E
Sbjct: 1   MIRKEEVYKIGIFNKPHGIHGELS-FTFTDD---IFDRVEAEYLICLLD--GIFVPFFIE 54

Query: 64  GWK-RHNKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTN 122
            ++ R +   +VKL+G+D  E A + TN E+             E  W    G ++   +
Sbjct: 55  EYRFRSDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEGAGPGELSWDFFVGFRMEEVH 114

Query: 123 GYDLGVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 179
              LG VTD+  +  N + VV       +  +E LIP  +E  I  +D++ + I V+
Sbjct: 115 HGQLGEVTDVDTSTINTLFVVD------YKGEELLIP-AQEDFIMDIDQKHKVITVN 164