Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., RNA-binding protein from Pseudomonas simiae WCS417

 Score =  647 bits (1668), Expect = 0.0
 Identities = 336/454 (74%), Positives = 389/454 (85%), Gaps = 4/454 (0%)

Query: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
           MFENLTDRLS+TL++++GK +LTEDNIKDTLREVRMALLEADVALPVV+DFVN VKE AV
Sbjct: 1   MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAV 60

Query: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
           G EVS+SLTPGQ F+KIV+ +LE++MG +NE LNL+A PPAV+LMAGLQGAGKTT+ GKL
Sbjct: 61  GTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGKL 120

Query: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
           ++ LKER KK V+VVSADVYRPAAIKQLE LA ++GV FFPS   QKP+DIANAAI  AK
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEAK 180

Query: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
            KF DV+IVDTAGRL IDE+MM EI+ALH AINPVETLFVVDAMTGQDAA+TAKAFGDAL
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAINPVETLFVVDAMTGQDAANTAKAFGDAL 240

Query: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGVILTKVDGDARGGAALSVR ITGKPIKFIG+GEK+DALEPFHP+RIASRILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERIASRILGMGDV 300

Query: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLP---GM 357
           LSLIE  +  +D++KA+KLAKK K+ KGFDLEDFR+QL QMKNMGG+ G++DKLP   G+
Sbjct: 301 LSLIEQAEATLDKDKADKLAKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPNIGGV 360

Query: 358 SQLPADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLL 417
           +           ++ FKQMEAIINSMT  ER++P+LI GSRK+RIA GSGTQVQD+ RL+
Sbjct: 361 NLAQMGNAQGAAEKQFKQMEAIINSMTPAERRDPELISGSRKRRIAMGSGTQVQDIGRLI 420

Query: 418 KQFTQMQKMMKKMQ-QGGMKGMMRNMQGLMGGGG 450
           KQ  QMQKMMKK   +GGM  MMR M G++ GGG
Sbjct: 421 KQHKQMQKMMKKFSAKGGMAKMMRGMGGMLPGGG 454