Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., Signal recognition particle protein Ffh from Variovorax sp. SCN45

 Score =  540 bits (1392), Expect = e-158
 Identities = 282/453 (62%), Positives = 345/453 (76%), Gaps = 1/453 (0%)

Query: 5   LTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVGVEV 64
           LT++ S+ +K +SG+ R+TE N++D LREVRMALLEADVALPVVRDFV RVKE A+G EV
Sbjct: 5   LTEKFSRLVKTMSGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKALGQEV 64

Query: 65  SKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKLSKLL 124
             SL PGQ  + IV ++L A MGE    +NLAAQPPAVILMAGLQGAGKTT+  KL+K L
Sbjct: 65  LGSLKPGQALVGIVNRELAATMGEGVSDINLAAQPPAVILMAGLQGAGKTTTTAKLAKHL 124

Query: 125 KERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFY 184
            E+ KKKVL VS DVYRPAAI+QL+T+    G ++FPS+PDQKP+DIA AA+DHAK+ ++
Sbjct: 125 IEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSSPDQKPLDIARAALDHAKRHYF 184

Query: 185 DVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDALPLTG 244
           DVL+VDTAGRLAIDE +MAEI+ LH A++PVETLFVVDAM GQDA +TAKAF +ALPLTG
Sbjct: 185 DVLLVDTAGRLAIDEVLMAEIKQLHAALDPVETLFVVDAMQGQDAINTAKAFKEALPLTG 244

Query: 245 VILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDVLSLI 304
           +ILTK DGD+RGGAALSVR +TG PIKF GV EK D LE F  +R A RILGMGD+++L+
Sbjct: 245 IILTKTDGDSRGGAALSVRQVTGVPIKFAGVSEKIDGLEVFDAERHAGRILGMGDIVALV 304

Query: 305 EDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQLPADM 364
           E +   VD   A+KLA K K   GFDL DF  QL QMK MGG+  ++DKLP      A  
Sbjct: 305 EQVTAGVDVAAAQKLAAKVKSGAGFDLNDFLGQLQQMKQMGGLSSLMDKLPQQMAAKATE 364

Query: 365 KDKV-DDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLKQFTQM 423
            D    +R  ++ E II SMT  ER+ P+L+K +RK+RIAAG+G QVQ+VNRLL +F QM
Sbjct: 365 ADMTRAERDIRRKEGIIQSMTPLERRKPELLKATRKRRIAAGAGVQVQEVNRLLNEFEQM 424

Query: 424 QKMMKKMQQGGMKGMMRNMQGLMGGGGRGGFGG 456
           Q MMKKM+ GG+  MM+ M G+ G GG GG GG
Sbjct: 425 QGMMKKMKGGGLMKMMKKMGGMKGMGGMGGPGG 457