Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) (NCBI) from Escherichia coli BW25113

 Score =  685 bits (1768), Expect = 0.0
 Identities = 346/452 (76%), Positives = 397/452 (87%)

Query: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
           MF+NLTDRLS+TL+NISG+GRLTEDN+KDTLREVRMALLEADVALPVVR+F+NRVKE AV
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
           G EV+KSLTPGQEF+KIVR +L A MGE N+ LNLAAQPPAV+LMAGLQGAGKTTSVGKL
Sbjct: 61  GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
            K L+E+ KKKVLVVSADVYRPAAIKQLETLA  +GVDFFPS   QKP+DI NAA+  AK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
            KFYDVL+VDTAGRL +DE MM EI+ +H +INPVETLFVVDAMTGQDAA+TAKAF +AL
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGV+LTKVDGDARGGAALS+RHITGKPIKF+GVGEKT+ALEPFHPDRIASRILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300

Query: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL 360
           LSLIED++  VD+ +AEKLA K K+  GFDL DF EQL QMKNMGGM  ++ KLPGM Q+
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360

Query: 361 PADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLKQF 420
           P ++K ++DD+V  +MEAIINSMTMKER  P++IKGSRK+RIAAG G QVQDVNRLLKQF
Sbjct: 361 PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQF 420

Query: 421 TQMQKMMKKMQQGGMKGMMRNMQGLMGGGGRG 452
             MQ+MMKKM++GGM  MMR+M+G+M  G  G
Sbjct: 421 DDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPG 452