Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., cytochrome c biogenesis protein CcsA from Rhodanobacter sp000427505 FW510-R12

 Score =  143 bits (361), Expect = 3e-39
 Identities = 88/261 (33%), Positives = 143/261 (54%), Gaps = 3/261 (1%)

Query: 3   NLIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNL 62
           +++A+ A  LYL + A +   L+       +     A  A+L H  +L  L +H    +L
Sbjct: 4   HVLALFAIALYLAAAAGLARPLLGGGQPLNRLALALAGAAVLIHAGIL--LGMHRGALDL 61

Query: 63  SILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPK 122
                 SL++F++S    L      +  L  + +  +A  L+  +FL    +     D +
Sbjct: 62  HFFAALSLVAFVVSALTLLVNVSRPVAALGVIVFPLTAALLALDSFLAPPTLPQ-PMDWQ 120

Query: 123 LLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIILI 182
           + LH+++AL ++  LSI A+ A+ LA  +  L+ +++      LPPL L E  LF++I  
Sbjct: 121 IKLHVTVALLAFGVLSIAAVLAIMLALQERALRHRQLGRWLRALPPLTLTETLLFRLISA 180

Query: 183 GNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFAV 242
           G +LLT TLLTG +FV ++F Q  AHK +LS  AW+V+ +LL+G +R GWRG +     +
Sbjct: 181 GFVLLTLTLLTGVLFVDNLFGQHLAHKTVLSIGAWLVFGVLLYGRWRHGWRGTRAVNLTL 240

Query: 243 AGATLLTLAYFGSRFVREIIL 263
            G  +L LA+FGS+FV E+IL
Sbjct: 241 IGMAVLVLAFFGSKFVLELIL 261