Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., cytochrome C assembly protein from Pseudomonas simiae WCS417

 Score =  154 bits (389), Expect = 2e-42
 Identities = 94/262 (35%), Positives = 146/262 (55%), Gaps = 4/262 (1%)

Query: 4   LIAIAAAMLYLLSIATIVPGLVNQTGIRA-KTVFISAAI-ALLFHGWLLSDLILHSSGQN 61
           L ++AAA+LY  + AT+  G     G +A K + +   + ALL H   L   ++   G  
Sbjct: 9   LPSLAAAILY--AAATLYQGTRLAQGAKADKRLLVGLGVLALLAHAASLFTHLMTPVGLG 66

Query: 62  LSILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDP 121
           L   + ASLI+  +     LA ++  +  LL + +    + +  A F P   +  ++ +P
Sbjct: 67  LDFFSAASLIAAAVIALTLLACYRIPVENLLVLLFPLGMLTVLMAQFAPTGTVQVIDEEP 126

Query: 122 KLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIIL 181
            +L HI L++ +Y   +I    AL L   DH+LK K    +  N PPL  +E  LF  + 
Sbjct: 127 GILAHILLSILAYGMFTIAVFQALLLLLQDHQLKHKHPSGLIKNFPPLQTMESLLFGFLW 186

Query: 182 IGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFA 241
            G  LL+ +L++G++FV+++FAQ   HK +L+ +AW+V+S+LLWG  R GWRG K   + 
Sbjct: 187 AGWTLLSLSLISGWLFVENLFAQHLVHKTLLACLAWVVFSVLLWGRNRLGWRGHKAIRWT 246

Query: 242 VAGATLLTLAYFGSRFVREIIL 263
           +AG  LL LAYFGS+ VRE IL
Sbjct: 247 LAGFCLLMLAYFGSKLVREYIL 268