Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., Inner membrane protein YpjD from Variovorax sp. SCN45

 Score = 99.0 bits (245), Expect = 9e-26
 Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 21/273 (7%)

Query: 4   LIAIAAAMLYLLSIATIVP-GLVNQTGIRAKTVFISAAIALLFHGWLLSDLIL-HSSGQN 61
           ++AI + +   L IAT V  G V   G R        A+ +    WLL  L L H    +
Sbjct: 2   ILAIPSPLGVALGIATAVAYGFVAAAGARMSRQATQWALGI---AWLLHALALAHGLIGS 58

Query: 62  LSILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSA---ATFLPGTFITHLE 118
                 A  +S    L +++   ++R++  L V  + + +  +A   A    G+ + H+ 
Sbjct: 59  EPRFGFAPALSVTAWLVLTVYAVESRMYPQLKVRRALAWLGAAAVLLAILFAGSPL-HVS 117

Query: 119 SDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSK-KVFSINPNLP--PLLLVERQ 175
           + P L LH++L + SY       ++A    WL  + + + ++ +  P+    PLL +ER 
Sbjct: 118 ASPWLPLHLALGIASYGLFGAAVVHA----WLITRAEKQIRLATAEPHQGGVPLLTLERL 173

Query: 176 LFKIILIGNLLLTGTLLTGFIFVQDMFAQGKA-----HKGILSFVAWIVYSILLWGHYRK 230
            F+ +  G +LL+ TLL G +F + ++          HK   S +AW+ +++LL G  R 
Sbjct: 174 TFRFVTAGFVLLSATLLAGLLFSEQLYGTAGRFWKWDHKTTFSVLAWLTFAVLLIGRARF 233

Query: 231 GWRGKKVTWFAVAGATLLTLAYFGSRFVREIIL 263
           GWRG+       AG+ LL LAY GSRFV E++L
Sbjct: 234 GWRGRTARRVLYAGSALLLLAYVGSRFVLEVVL 266