Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., putative Membrane protein from Pseudomonas putida KT2440

 Score =  142 bits (358), Expect = 8e-39
 Identities = 89/259 (34%), Positives = 138/259 (53%), Gaps = 4/259 (1%)

Query: 7   IAAAMLYLLSIATIVPGLVNQTGIRAKTVFIS--AAIALLFHGWLLSDLILHSSGQNLSI 64
           + AA LY+   A I  G     G +A+   +    AIA+L     L   ++   G +L  
Sbjct: 25  LIAAGLYIA--AAIYQGSYLSQGRKAEKRLLGLLGAIAVLAQAGALFFQLITPLGLSLDF 82

Query: 65  LNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKLL 124
            + ASLI+  +     LA  +  +  LL + +   A+    A F P   +  +  +P +L
Sbjct: 83  FSAASLIAVAVISLTLLACLRIPVENLLVLLFPLGAVTALLAQFAPPGTVPLINEEPGIL 142

Query: 125 LHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIILIGN 184
            HI L++ +Y   +I    +L L   D +LK+K    +  N PPL  +E  LF  +  G 
Sbjct: 143 AHILLSILAYGLFTIAVFQSLLLLLQDRQLKNKHPSGLIRNFPPLQTMESLLFGFLWAGW 202

Query: 185 LLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFAVAG 244
            LL+ +L++G++F+ ++FAQ  AHK +L+ VAW+V+S+LLWG  R GWRG     + ++G
Sbjct: 203 CLLSLSLISGWLFLDNLFAQHLAHKTLLACVAWVVFSVLLWGRTRLGWRGHMAIRWTLSG 262

Query: 245 ATLLTLAYFGSRFVREIIL 263
             LL LAYFGS+ VRE IL
Sbjct: 263 FCLLMLAYFGSKLVREFIL 281