Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 263 a.a., predicted inner membrane protein (RefSeq) from Escherichia coli BW25113

 Score =  270 bits (690), Expect = 2e-77
 Identities = 134/261 (51%), Positives = 186/261 (71%), Gaps = 3/261 (1%)

Query: 4   LIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHS--SGQN 61
           + A+ A + Y +S+A IVPGL+ + G   +   ISA IAL+ H   L   IL    SGQN
Sbjct: 3   VFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQN 62

Query: 62  LSILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDP 121
           LS+LNV SL+S +I   M++   + R W LLP+ Y+F+ INL+ ATF+P  +ITHLE+ P
Sbjct: 63  LSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATP 122

Query: 122 KLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIIL 181
            +L+HI L+LFSY+TL I ALYALQLAW+D++LK+KK+ + N  +PPL+ +ER++F I  
Sbjct: 123 GMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL-AFNQEMPPLMSIERKMFHITQ 181

Query: 182 IGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFA 241
           IG +LLT TL TG  ++ ++F+     K +LS VAW VY +LLWGHY +GWRG++V WF 
Sbjct: 182 IGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFN 241

Query: 242 VAGATLLTLAYFGSRFVREII 262
           VAGA +LTLAYFGSR V+++I
Sbjct: 242 VAGAVILTLAYFGSRIVQQLI 262