Pairwise Alignments

Query, 860 a.a., alanine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 872 a.a., alanyl-tRNA synthetase from Pseudomonas simiae WCS417

 Score = 1097 bits (2838), Expect = 0.0
 Identities = 550/862 (63%), Positives = 652/862 (75%), Gaps = 16/862 (1%)

Query: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62
           M + E+R AFL FFE +GH  V SSSL+P NDPTLLFTNAGMNQFKDCFLG EKRAYTRA
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122
            ++Q+CVRAGGKHNDLENVG+TARHHTFFEMLGNFSFGDYFK+DAI +AW FLT VL+LP
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTGVLKLP 120

Query: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182
           KE+L VTVY +DDEA+DIW K+VG+PA+R++RIGD KG   + SDNFW MGDTGPCGPCT
Sbjct: 121 KEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAP-YASDNFWTMGDTGPCGPCT 179

Query: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242
           EIFYDHG  IWGGPPGSPEEDGDR+IEIWNNVFMQFNR ADG + PLP PSVDTGMG+ER
Sbjct: 180 EIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLER 239

Query: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSLRVVADHIRSCAFLIVDGVMPSN 302
           ISA+MQ VHSNYEID+FQ+L+ AAA AIG  +    SL+VVADHIRSC FLI DGV+PSN
Sbjct: 240 ISAVMQHVHSNYEIDLFQSLLAAAAKAIGCTNEDQASLKVVADHIRSCGFLIADGVLPSN 299

Query: 303 EGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRIE 362
           EGRGYVLRRIIRRA RHGNKLGA G+FF+++V  L   MG A  ELK+ QA +E+VL+ E
Sbjct: 300 EGRGYVLRRIIRRACRHGNKLGANGSFFYQIVAALVAEMGEAFPELKQNQAHIERVLKAE 359

Query: 363 EENFGRTLDRGMSILNDALDQLSGQVLDGETVFKLYDTYGFPADLTNDVARERGFSIDEA 422
           EE F +TL++G+ IL   L  L G V+ G+ VFKLYDTYGFP DLT D+ARER  ++DE 
Sbjct: 360 EEQFAKTLEQGLKILEQDLANLQGSVVPGDVVFKLYDTYGFPMDLTGDIARERNLTLDEE 419

Query: 423 GFEQAMEEQRQRAREAGQFGTDYNSLIKSATNTEFCGYTASRGQSVVREMFVEGAEVSTL 482
           GFE+ ME QR RAR A  FG DYNSL+K    TEF GY A+RG + V  ++ EG  V  L
Sbjct: 420 GFEREMEAQRVRARSASSFGMDYNSLVKVDVATEFTGYKATRGAAKVVALYKEGQSVDVL 479

Query: 483 SAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAIAHHGVIAQGVLA 542
           + GD  ++VLD TPFYAESGGQ GD G L+  +G F V DT K G A  HHGV+A G L 
Sbjct: 480 NEGDDGVVVLDQTPFYAESGGQIGDCGFLEASSGRFDVRDTTKTGGAFLHHGVLASGSLT 539

Query: 543 TGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEA 602
            G  V+A VD   R A SLNHSATHLLHAALR+VLGEHV QKGSLV ++ LRFDFSH EA
Sbjct: 540 VGSPVEAQVDADVRHATSLNHSATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEA 599

Query: 603 MTAAEIKEVERLVNQEVRRNHSIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM-GDFS 661
           +   +IK +E +VN E+R+N ++ET   +I+ AKAKGAMALFGEKY D VRVLSM GDFS
Sbjct: 600 IKPEQIKALEDIVNAEIRKNTAVETEETDIETAKAKGAMALFGEKYGDSVRVLSMGGDFS 659

Query: 662 TELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQAQHDA------ 715
            ELCGGIHA+ TGDI L KI+SEGG+A+G+RRIEAVTG  AL YL+A + Q         
Sbjct: 660 VELCGGIHANRTGDIALLKIVSEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVK 719

Query: 716 --------KVSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGAD 767
                   K+S +  + + LEK+++QL+ K A+     L      +  V VL A+L+G D
Sbjct: 720 GSRDNLIDKLSAVLERNRALEKQLEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQD 779

Query: 768 NKALRGMVDDLKNQLSSGIIMLGNVAEGKVGLIAGVTNDLTNKVKAGELVNMVALQVGGK 827
            KAL  +VD LKN+L   +I+LG V E KV L+AGVT DLT ++KAG+L+   A  VGGK
Sbjct: 780 GKALLALVDQLKNKLGRAVILLGGVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGK 839

Query: 828 GGGRPDMAQAGGTDAHALPSAL 849
           GGGRPDMAQ GG DA AL +AL
Sbjct: 840 GGGRPDMAQGGGVDAGALDAAL 861