Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 881 a.a., DNA mismatch repair protein MutS from Rhodanobacter sp000427505 FW510-R12

 Score =  906 bits (2342), Expect = 0.0
 Identities = 488/867 (56%), Positives = 617/867 (71%), Gaps = 19/867 (2%)

Query: 12  LSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPI 71
           ++ H+P M+QYL  KAE+PD+LLF+RMGDFYELFYDDA++A+ LLDI+LT+RG S G PI
Sbjct: 14  IASHSPGMRQYLSAKAEHPDVLLFFRMGDFYELFYDDARKAARLLDITLTQRGQSGGAPI 73

Query: 72  PMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLS 131
           PMAGVP+HA E YLA+LV++GESVAICEQ+GDPA +KG VERKVVR+VTPGTVTD ALL 
Sbjct: 74  PMAGVPYHAAENYLARLVRLGESVAICEQMGDPALAKGIVERKVVRVVTPGTVTDAALLE 133

Query: 132 ERVDNLIAAIYHHN-GRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFS 190
           ER DNL+ AI     G +G A +D++SGRF LSE    E +AAEL R  P E L  ED +
Sbjct: 134 ERRDNLLLAIAAGTRGDYGLAWVDLSSGRFLLSEVPNAEALAAELARLQPAETLVGEDVA 193

Query: 191 PVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYVK 250
              L+++  G R+RP W F+ D A ++LN+ FGTRDL GFGV++  L + AAGCL+ YV+
Sbjct: 194 WPKLVSTLPGLRKRPPWHFDRDAATRELNRFFGTRDLGGFGVDKLPLAVAAAGCLLGYVE 253

Query: 251 DTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSR 310
           +TQ++ALPH+  +  +   +++ LDAATRRNLEL  + +G T++TL  VLD   TPMG+R
Sbjct: 254 ETQKSALPHLTGMAVESASETIALDAATRRNLELDTHPSGRTEHTLLGVLDETVTPMGAR 313

Query: 311 MLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSARPR 370
           +L+RW+ +P+R    L +R  AI  L ++  +  L   L+ IGD+ERILAR+ALRSARPR
Sbjct: 314 LLRRWLTRPLRSRDVLRRRHQAIGMLIDSRRHEPLREQLRGIGDLERILARVALRSARPR 373

Query: 371 DLARLRHAMQQLPELHSVMSELK----------QPHLTELRTHAEPMDELCDLLERAIKE 420
           DL+ LR  +     L     + K           P L  L        +   LL RAI E
Sbjct: 374 DLSTLRDGLIIASALFHEREDQKAAIHGRTLQESPLLATLLDRIGNHADTAALLARAIVE 433

Query: 421 NPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGF 480
            PP + RDGGVIADGY AELDE R L+  A ++L  LE  E+   GI TLKVGYN VHG+
Sbjct: 434 QPPALQRDGGVIADGYDAELDELRRLSTHADQYLIELEEREKAASGIPTLKVGYNRVHGY 493

Query: 481 YIQVSRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFD 540
           YI+++R QS   P HY RRQT KNAERYI EELK  EDKVL++K R+L  E+ L+E L D
Sbjct: 494 YIEITRAQSDKAPTHYTRRQTTKNAERYITEELKAFEDKVLSAKERSLMRERALYEALLD 553

Query: 541 LLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMN 600
            L   LE L+  AA++A+LDVL  LAERAE L++  P L  E GI I+ GRHPVVE+V +
Sbjct: 554 TLTERLEPLKAAAAAMAELDVLGTLAERAEALDWSAPELTDEPGIRIERGRHPVVEKVRD 613

Query: 601 EPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRI 660
           EPF  N + L+  RRML+ITGPNMGGKSTYMRQ ALI L+AHIGSYVPA SA+IGP+DRI
Sbjct: 614 EPFEPNDLILDDHRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPASSATIGPIDRI 673

Query: 661 FTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAE 720
           FTRIGA DDL+ G+STFMVEM+ETANILHNA+ +SLVLMDE+GRGTSTYDGL+LA A+A 
Sbjct: 674 FTRIGAGDDLSRGQSTFMVEMSETANILHNASADSLVLMDEVGRGTSTYDGLALARAAAV 733

Query: 721 WLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVE-----HGDGIAFMHAVQEGAAS 775
            LA+   A TLFATHYFELTEL      +ANVHLDAVE      G+ + FMHAV+EG A+
Sbjct: 734 HLARHSRAYTLFATHYFELTELAGEFASIANVHLDAVEFHDQKRGEQLVFMHAVKEGPAN 793

Query: 776 KSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLSLI--PEPSA 833
           +S+GL VA LAG+PK VI +A+  L +LE    Q A    P+  + + QL L    +PSA
Sbjct: 794 RSFGLQVAALAGLPKSVIADAKRTLAELERGMHQHASAPAPAG-EPSPQLGLFAPAQPSA 852

Query: 834 VEQALAGVDPDQLTPRQALDMLYQLKK 860
            E+ L  +DPD LTPR+AL++LY+LK+
Sbjct: 853 AERLLEAIDPDALTPREALELLYRLKR 879