Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas simiae WCS417

 Score =  947 bits (2447), Expect = 0.0
 Identities = 501/859 (58%), Positives = 624/859 (72%), Gaps = 11/859 (1%)

Query: 9   SESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAG 68
           +  LS HTPMMQQY RLK ++PD L+FYRMGDFYE+FY+DAK+A++LLDI+LT RG SAG
Sbjct: 5   TSDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAG 64

Query: 69  EPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEA 128
           + IPM G+P+H++EGYL KLV++GESV ICEQIGDPATSKGPVER+VVRI+TPGTV+DEA
Sbjct: 65  QSIPMCGIPYHSLEGYLVKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEA 124

Query: 129 LLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPED 188
           LL ER DNLIAA+      FG + +DITSG F + E +  E + AEL+R +P ELL P+D
Sbjct: 125 LLDERRDNLIAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDD 184

Query: 189 FSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQY 248
           +        R+G +RR  W+FE D+A + L QQF  +DL GFG E   L + AAGCL+ Y
Sbjct: 185 WPKDLPAEKRRGAKRRAPWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAGCLLGY 244

Query: 249 VKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMG 308
            K+TQRTALPH+RSL  +R D +V+LD A+RRNLEL  NLAGG DNTL  V+D C T MG
Sbjct: 245 AKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMG 304

Query: 309 SRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSAR 368
           SR+L RW+++P+RD + L  R  +IT L +   + +L P LK+IGDIERILAR+ LR+AR
Sbjct: 305 SRLLTRWLNRPLRDLSVLQARQTSITCLLDGYRFEKLQPQLKEIGDIERILARIGLRNAR 364

Query: 369 PRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRD 428
           PRDLARLR A+  LP+L + M+EL  PHL +L   A    EL  LL +AI +NPP +IRD
Sbjct: 365 PRDLARLRDALAALPQLQAAMTELDTPHLQQLAVTAGTYPELAALLGKAIIDNPPAIIRD 424

Query: 429 GGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQ 488
           GGV+  GY +ELDE + L+  A +FL  LEA E+ R G+  LKVGYN VHG++I++   Q
Sbjct: 425 GGVLKTGYDSELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPSKQ 484

Query: 489 SHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQ 548
           +   P  Y RRQTLK AER+I  ELK+ EDK L++KSRALA EK L+E L + L+  L  
Sbjct: 485 AESAPIDYQRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYENLLEDLISQLAP 544

Query: 549 LQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPI 608
           LQ  A+++A+LDVL NLAERA NL+   P  V E  + I  GRHPVVE+V+  PF+AN +
Sbjct: 545 LQDTASALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQGRHPVVEQVLTTPFVANDL 604

Query: 609 ELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASD 668
            L+   RML+ITGPNMGGKSTYMRQTALI L+AHIGS+VPA S  +  +DRIFTRIG+SD
Sbjct: 605 SLDDDTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSD 664

Query: 669 DLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGA 728
           DLA GRSTFMVEM+ETANILHNAT  SLVLMDE+GRGTST+DGLSLAWA+AE LA  + A
Sbjct: 665 DLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLA-HLRA 723

Query: 729 MTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGV 788
            TLFATHYFELT LP   P +ANVHL+A EH + I F+H V  G AS+SYGLAVA LAGV
Sbjct: 724 YTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGV 783

Query: 789 PKPVIKNARAKLQQLE--------LLSSQPAETRKPSRVDIANQLSLIPEPSAVEQALAG 840
           P  VI  AR  L +LE         ++S    + KPS    ++  + +P P  V   LA 
Sbjct: 784 PNDVITRAREHLSRLETTALPHETAVASPAKASSKPSAPHQSDMFASLPHP--VLDELAK 841

Query: 841 VDPDQLTPRQALDMLYQLK 859
           +D D LTPR+AL+MLY LK
Sbjct: 842 LDLDDLTPRKALEMLYALK 860