Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 865 a.a., DNA mismatch repair protein MutS from Variovorax sp. SCN45

 Score =  757 bits (1955), Expect = 0.0
 Identities = 423/862 (49%), Positives = 556/862 (64%), Gaps = 23/862 (2%)

Query: 18  MMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPIPMAGVP 77
           MM QYL LKA++PD LLFYRMGDFYELF+ DA++A+ LLDI+LT+RG SAG+P+ M GVP
Sbjct: 1   MMAQYLGLKADHPDTLLFYRMGDFYELFWGDAEKAARLLDITLTQRGQSAGQPVVMCGVP 60

Query: 78  FHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLSERVDNL 137
           FHAV+ YLA+L+++GESVAICEQ+G+   SKGPVERKV+R+VTPGT+TD  LLS++ ++L
Sbjct: 61  FHAVDTYLARLIKLGESVAICEQVGEVGASKGPVERKVMRVVTPGTLTDSELLSDKSESL 120

Query: 138 IAAIYHHNGRF-GYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFSPV---H 193
           + A++  +  F G A + +T    +L+E   +  + A + R +P ELL+  + +P     
Sbjct: 121 LLAVHAGSRNFCGLAWLSVTGAELRLAECPADA-LEAWIARIAPSELLYSAEVTPAFEQR 179

Query: 194 LMASRQGN----RRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYV 249
           L A+R         RP W+F+    +++L++Q G+  L  +  E       AA  L+ Y 
Sbjct: 180 LKAARSATPFTLSIRPAWQFDGGLGERKLSEQMGSNSLAAWNAESLGNAHAAAAALLGYA 239

Query: 250 KDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGS 309
           + TQ  AL H++ L+ +R    + L   TRRNLEL   L G    T+  +LD C T MGS
Sbjct: 240 EHTQGRALSHVQRLSVERDGDLIELPPTTRRNLELVQTLRGEESPTMFSLLDTCMTGMGS 299

Query: 310 RMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHP------VLKQIGDIERILARLA 363
           R+LKRW+  P RD +   +RL+AI  L+ T L G   P       LK   D+ERI AR+A
Sbjct: 300 RLLKRWLLSPRRDRSEAQERLEAIGALQATVLGGTAAPWRTLREQLKNTSDVERIAARIA 359

Query: 364 LRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPP 423
           LR  RPR+L  LR A+ +  +L  ++       L  +     P     DLL  AIK +P 
Sbjct: 360 LRQVRPRELLALRLALAKAEQLAPLLPGAAAL-LARITERLAPPPGCADLLVSAIKPDPS 418

Query: 424 VVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQ 483
            ++RDGGVIA G+ AELDE R ++    +FL +LE  ER+R GI  L+V +N VHGFYI+
Sbjct: 419 ALVRDGGVIATGHDAELDELRAISENCDDFLLKLEVSERERTGISNLRVQFNRVHGFYIE 478

Query: 484 VSRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLM 543
           V++     VP +Y RRQTLKNAER+I  ELK  EDK L+++ RALA EK L+E+L D L 
Sbjct: 479 VTQSALSKVPDNYRRRQTLKNAERFITPELKAFEDKALSAQDRALAREKWLYEQLLDALQ 538

Query: 544 PHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEP- 602
           P +  L QLA  +A LD L  LAER+  L +  P+ V    I I  GRHPVVE  + E  
Sbjct: 539 PSVPALTQLAGGIATLDALCALAERSHTLHWRAPSFVSHPCIEISQGRHPVVEARLAEKS 598

Query: 603 ---FIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDR 659
              FIAN  +L PQ+RM +ITGPNMGGKSTYMRQ A+I L+A IGS+VPA +  +GP+D 
Sbjct: 599 SGGFIANDTQLGPQQRMQVITGPNMGGKSTYMRQVAIIVLLASIGSHVPAAACRLGPIDA 658

Query: 660 IFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASA 719
           I TRIGA+DDLA+ +STFM+EMTE A ILH+AT  SLVLMDEIGRGTST+DGL+LA   A
Sbjct: 659 IHTRIGAADDLANAQSTFMLEMTEAAQILHSATAQSLVLMDEIGRGTSTFDGLALAAGIA 718

Query: 720 EWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYG 779
             L     A TLFATHYFELTE P       N+H+ A E G  I F+H +Q G ASKSYG
Sbjct: 719 AQLHDRSKAFTLFATHYFELTEFPATHHGAVNMHVSATEAGRDIVFLHEMQPGPASKSYG 778

Query: 780 LAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLSLIPEPSAVEQALA 839
           + VA LAG+P  V+ +AR   Q LE L SQ A+TR    +     ++  P  SAVE ALA
Sbjct: 779 IQVARLAGMPAAVVNHAR---QALEALESQHAQTRAQVDLFAPPPVAETPLVSAVESALA 835

Query: 840 GVDPDQLTPRQALDMLYQLKKL 861
            +DPD ++PR+ALD LY L+KL
Sbjct: 836 ALDPDAMSPREALDALYALQKL 857