Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., DNA mismatch repair protein MutS from Pseudomonas putida KT2440

 Score =  960 bits (2481), Expect = 0.0
 Identities = 510/857 (59%), Positives = 630/857 (73%), Gaps = 9/857 (1%)

Query: 12  LSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPI 71
           LS HTPMMQQY +LK ++PD L+FYRMGDFYE+FY+DAK+A++LLDI+LT RG SAG+ I
Sbjct: 4   LSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSI 63

Query: 72  PMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLS 131
           PM G+PFH++EGYLAKLV++GESV ICEQIGDPATSKGPVER+VVRI+TPGTV+DEALL 
Sbjct: 64  PMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALLD 123

Query: 132 ERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFSP 191
           ER DNLIAA+      FG A +DITSG F + E +  E + AEL+R +P ELL P+D+  
Sbjct: 124 ERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLIPDDWPR 183

Query: 192 VHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYVKD 251
                 R G RRR  W+F+ D+A++ L QQF T+DL GFG ++  L + AAGCL+ Y K+
Sbjct: 184 DLPAEKRPGARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTLAIGAAGCLLTYAKE 243

Query: 252 TQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSRM 311
           TQRTALPH+RSL  +R D +VILD A+RRNLEL  NLAGG DNTL  V+D C T M SR+
Sbjct: 244 TQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQSVIDRCQTAMASRL 303

Query: 312 LKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSARPRD 371
           L RW+++P+RD   L  R D+I  L ++  + +L P LK+IGDIERILAR+ LR+ARPRD
Sbjct: 304 LSRWLNRPLRDLKVLQARQDSIRCLLDSYRFEKLQPQLKEIGDIERILARIGLRNARPRD 363

Query: 372 LARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRDGGV 431
           LARLR A+  LPEL + M+EL+ PHL  L        EL  LLERAI +NPP VIRDGGV
Sbjct: 364 LARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERAIIDNPPAVIRDGGV 423

Query: 432 IADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSHL 491
           +  GY  ELDE   ++  A +FL  LEA E+ R G+  LKVGYN VHG++I++   Q+  
Sbjct: 424 LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPTKQAEQ 483

Query: 492 VPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQQ 551
            P  Y+RRQTLK AER+I  ELK  EDK L++KSRALA EK L++ L + L+ HL  LQ 
Sbjct: 484 APGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDALLETLISHLAPLQD 543

Query: 552 LAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPIELN 611
            AA++A+LDVL NLAERA NL+   P  V E  + I+ GRHPVVE+V+  PF+AN + L+
Sbjct: 544 SAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIEQGRHPVVEQVLTTPFVANDLGLD 603

Query: 612 PQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLA 671
              RMLIITGPNMGGKSTYMRQTALI L+AHIGS+VPA S  +  +DRIFTRIG+SDDLA
Sbjct: 604 NSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLA 663

Query: 672 SGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTL 731
            GRSTFMVEM+ETANILHNAT  SLVLMDE+GRGTST+DGLSLAWA+AE LA ++ A TL
Sbjct: 664 GGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLSLAWAAAERLA-QLRAYTL 722

Query: 732 FATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGVPKP 791
           FATHYFELT LP   P +ANVHL+A EH + I F+H V  G AS+SYGLAVA LAGVP  
Sbjct: 723 FATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPTA 782

Query: 792 VIKNARAKLQQLELLS---SQPAETRKPSRVDIANQLSL---IPEPSAVEQALAGVDPDQ 845
           VI+ AR  L +LE  S    QPA  +      + +Q  L   +P P A+E+ L  +  D 
Sbjct: 783 VIQRAREHLGRLETTSLPHEQPAAHKAKDAPQVPHQSDLFASLPHP-AIEK-LGKLQLDD 840

Query: 846 LTPRQALDMLYQLKKLL 862
           +TPRQA++MLYQLK LL
Sbjct: 841 MTPRQAIEMLYQLKNLL 857