Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., DNA mismatch repair protein MutS from Methylophilus sp. DMC18

 Score =  877 bits (2265), Expect = 0.0
 Identities = 464/854 (54%), Positives = 598/854 (70%), Gaps = 9/854 (1%)

Query: 11  SLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEP 70
           S  +HTPMM+QYL LKA+ PD+LLFYRMGDFYELF++DA++A+ LL I+LT+RGAS GEP
Sbjct: 2   SFENHTPMMRQYLTLKAQYPDMLLFYRMGDFYELFFEDAEKAARLLGITLTRRGASNGEP 61

Query: 71  IPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALL 130
           I MAG+P+HA E YLAKL ++GE+VAICEQ+GDPATSKGPV R+V RI+TPGT+TD ALL
Sbjct: 62  IKMAGLPYHAAEQYLAKLAKVGEAVAICEQVGDPATSKGPVAREVTRILTPGTLTDAALL 121

Query: 131 SERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFS 190
            E  DN +  +    G  G A +++ SG F L+E      +  EL+R  P EL+  ED +
Sbjct: 122 DETRDNTLLCVARGEGVLGLARLNLASGEFVLTEI-APGHLPQELERIHPAELVMAEDHN 180

Query: 191 PVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYVK 250
              L  +R   +R   W+F+L+TA + L QQF T DL GFG  +    + AAG L++YVK
Sbjct: 181 AEVLQHARCAKKRLAPWQFDLETASRSLTQQFNTHDLAGFGCGEMPAAVTAAGALLEYVK 240

Query: 251 DTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSR 310
            TQRTALPHI  L  ++    + LDAATRRNLE+   + G    TL  +L+   T MG+R
Sbjct: 241 HTQRTALPHIVGLRVEQSHHYLQLDAATRRNLEIDTTIRGEASPTLYSLLNSTQTAMGAR 300

Query: 311 MLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSARPR 370
           +L+ W+H P+R+  T+ QR  A+ EL E  L   L   L  +GDIER+ AR+AL+SARPR
Sbjct: 301 LLRHWLHHPLRNQQTIQQRHLAVAELFEQFLDSALQQALHPVGDIERMTARVALKSARPR 360

Query: 371 DLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRDGG 430
           DL+ LR ++ QLP L SV+   +   L  L    +   E   +L +AI+  P  V+R+GG
Sbjct: 361 DLSGLRDSLLQLPALVSVLPRTQSGLLQSLIAELQVPAEALQILVQAIQAEPSAVLREGG 420

Query: 431 VIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSH 490
           VIA GY AELD+ R +     +FL + EA E+ R GI  LKV YN+VHGFYI++SR Q+ 
Sbjct: 421 VIATGYDAELDDLRAIQTDHGDFLLQFEAAEKARTGITNLKVEYNSVHGFYIEISRLQAE 480

Query: 491 LVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQ 550
             P  Y RRQTLKN ER+I  ELK  EDKVL++  RALA EK L+E++ + L+PH+ QLQ
Sbjct: 481 SAPAEYRRRQTLKNVERFITPELKAFEDKVLSANERALAREKMLYEQVLEALLPHIAQLQ 540

Query: 551 QLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPIEL 610
           ++A +VA LDVL   AERA +L Y +P    + GI IQGGRHPVVE +  +P++AN + L
Sbjct: 541 RIATAVATLDVLACFAERARSLNYVQPQFRADTGIDIQGGRHPVVESIA-QPYVANDVVL 599

Query: 611 NPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDL 670
           NP R++L+ITGPNMGGKST+MRQTALI L+A+ GS+VPA++A IG +DRIFTRIGASDDL
Sbjct: 600 NPYRQLLLITGPNMGGKSTFMRQTALIVLLAYCGSFVPAQTAVIGEIDRIFTRIGASDDL 659

Query: 671 ASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMT 730
           A GRSTFMVEMTETANIL+NAT NSLVL+DEIGRGTST+DGLSLAWA A+ L ++  ++T
Sbjct: 660 AGGRSTFMVEMTETANILNNATANSLVLLDEIGRGTSTFDGLSLAWAVAKQLLEKNKSLT 719

Query: 731 LFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGVPK 790
           LFATHYFELT + +   H ANVHLDAVEHG GI F+H V+EGAA+ SYG+ VA LAG+PK
Sbjct: 720 LFATHYFELTRIVDEAKHAANVHLDAVEHGQGIVFLHKVEEGAATMSYGIQVAQLAGIPK 779

Query: 791 PVIKNARAKLQQLE--LLSSQPAETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTP 848
            V++ A+ KLQQLE   +++ P      S V         P    V   L  + PD LTP
Sbjct: 780 SVVQLAKRKLQQLENQTIAATPQNDLFASAVPPEE-----PPAHPVVAELERIQPDDLTP 834

Query: 849 RQALDMLYQLKKLL 862
           +QAL++LYQLKK L
Sbjct: 835 KQALELLYQLKKQL 848