Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., DNA mismatch repair protein MutS from Alteromonas macleodii MIT1002

 Score = 1030 bits (2663), Expect = 0.0
 Identities = 546/880 (62%), Positives = 659/880 (74%), Gaps = 34/880 (3%)

Query: 12  LSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPI 71
           +  HTPMM+QYL +KA++P+ILLFYRMGDFYELFYDDAK+A+ELLDISLT RG S GEPI
Sbjct: 1   MESHTPMMRQYLTIKAQHPNILLFYRMGDFYELFYDDAKKAAELLDISLTARGKSGGEPI 60

Query: 72  PMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLS 131
           PMAGVP+HAVE YL++LV+MGESVAICEQ+GDPATSKGPVER V RIVTPGTVTDEALL 
Sbjct: 61  PMAGVPYHAVESYLSRLVKMGESVAICEQVGDPATSKGPVERAVQRIVTPGTVTDEALLE 120

Query: 132 ERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFSP 191
           ER DN++AA+  H+  +G AT+D+TSGRF + E  ++E + AE+QR +P ELL+PE F  
Sbjct: 121 ERRDNILAAVCGHSMHYGLATLDVTSGRFVVFECDSDESLLAEIQRINPAELLYPEGFES 180

Query: 192 VHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYVKD 251
           + L+ +R+G RRRP WEF++DTA +QLN QF T+ L GFG++    GL AAGC++QYVKD
Sbjct: 181 LALVENRKGLRRRPEWEFDIDTATEQLNAQFETKTLDGFGIKGVTKGLGAAGCVLQYVKD 240

Query: 252 TQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSRM 311
           TQRTALPHIR +  ++QD  V LDAATRRNLELTHNL+GG +NTL  V+D   T MGSRM
Sbjct: 241 TQRTALPHIRRIQTEQQDSRVQLDAATRRNLELTHNLSGGQENTLFSVMDTTTTAMGSRM 300

Query: 312 LKRWIHQPMRDNATLNQRLDAITELKETALYGE---LHPVLKQIGDIERILARLALRSAR 368
           L+R IH P+ D   L+ RLDA+    ET +  +   +   LK IGDIERI+ARLALRSAR
Sbjct: 301 LQRVIHSPLTDQHELHSRLDAV----ETFINDDPEDIRTALKHIGDIERIMARLALRSAR 356

Query: 369 PRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRD 428
           PRD ARL++A   LP+L   ++      +  +        EL  LL  AI +NPPVVIRD
Sbjct: 357 PRDFARLKNAFNALPDLQDALARFDTGQIRSISETIGTYPELQTLLNDAIIDNPPVVIRD 416

Query: 429 GGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQ 488
           GGVIA+GY+AELDE R L+ GAT++L+ +E  ER+R GI TLKVGYN VHGF+I++SR  
Sbjct: 417 GGVIAEGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVGYNKVHGFFIEISRAN 476

Query: 489 SHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQ 548
           S L P  Y+RRQTLKN ERYI  ELK+HEDKVL+S+  ALALEKQL+E LFD   PHL  
Sbjct: 477 SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALALEKQLYEALFDNFAPHLNN 536

Query: 549 LQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPI 608
           L + AA++A+LDVL   AERA +L++ RP L QE  +    GRHPVVE VM +PFIANP+
Sbjct: 537 LIETAAALAKLDVLCCFAERAVSLDWYRPHLSQECALTYDAGRHPVVENVMKDPFIANPL 596

Query: 609 ELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASD 668
           +L+ +RRMLIITGPNMGGKSTYMRQTALIAL+A IGS+VPAE+A IG LDRIFTRIGASD
Sbjct: 597 QLDTERRMLIITGPNMGGKSTYMRQTALIALLACIGSFVPAENAHIGKLDRIFTRIGASD 656

Query: 669 DLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGA 728
           DLASGRSTFMVEMTETANIL+NAT NSLVLMDEIGRGTSTYDGLSLAWA A +LAK++ A
Sbjct: 657 DLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTSTYDGLSLAWACASYLAKQLNA 716

Query: 729 MTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGV 788
            TLFATHYFELTELP     + NVHLDA+E  D I FMH V EGAASKS+GL VA LAGV
Sbjct: 717 YTLFATHYFELTELPETQSGVVNVHLDAMEFEDTIRFMHTVSEGAASKSFGLQVAQLAGV 776

Query: 789 PKPVIKNARAKLQQLE---LLSSQPAETRK--------PSRVDIANQLS----------- 826
           PK VIK A+ KL  LE   L++S    +           S V   N+ S           
Sbjct: 777 PKAVIKAAQQKLAVLESSHLMTSTENGSENANDEAFVAKSSVKGGNKTSGSGKATSNTKG 836

Query: 827 ----LIPE-PSAVEQALAGVDPDQLTPRQALDMLYQLKKL 861
               L P+ P  V +AL  + PD+L+PRQALD++Y LK+L
Sbjct: 837 QAEMLFPDKPHPVVEALENLSPDELSPRQALDLIYTLKRL 876