Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 883 a.a., DNA mismatch repair protein MutS from Acinetobacter radioresistens SK82

 Score =  776 bits (2003), Expect = 0.0
 Identities = 430/871 (49%), Positives = 575/871 (66%), Gaps = 24/871 (2%)

Query: 12  LSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPI 71
           LS HTPMMQQYL++K ++   LLFYRMGDFYELF+DDA +A++LL I+LT RG + G PI
Sbjct: 10  LSPHTPMMQQYLKVKMQHNYALLFYRMGDFYELFFDDAHKAAKLLGITLTHRGKANGNPI 69

Query: 72  PMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLS 131
           PMAGVP+H+ EGYLA+LV+ GE+VAICEQ+G+  T KGPVERKVVRI+TPGT+TD+ALLS
Sbjct: 70  PMAGVPYHSAEGYLARLVKAGETVAICEQVGE-VTGKGPVERKVVRILTPGTLTDDALLS 128

Query: 132 ERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTE-EEMAAELQRTSPRELLFPEDFS 190
               + + A+     + G A +D+++G F++ + +   E++A EL R  P E+L  ED  
Sbjct: 129 SYQSSNLVALCFQQNQVGIALLDLSAGIFKVQQQEYRAEQLAIELSRLMPSEILVDEDLV 188

Query: 191 PVHLMASRQGN-----RRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCL 245
             +++   +        +RP  +F L+ A++ L  QF    L GFG++   L   AA  L
Sbjct: 189 DANIIEQIKKQIDCPVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGIDHLPLAKAAAAAL 248

Query: 246 IQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNL-AGGTDNTLAEVLDHCA 304
           I Y K+TQ+TALPHIRS+  ++    + LD  TRRNLE+   L   GT  +L  +++ C 
Sbjct: 249 IHYAKETQKTALPHIRSIRLEQSSDFIALDPVTRRNLEIIDPLFEHGT--SLFHLINECQ 306

Query: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364
           T MGSR+L R + QP+RD   L  RLDAI +L +      +  VLK+I DIER+L+R+AL
Sbjct: 307 TAMGSRLLSRTLMQPIRDTVILEARLDAIEQLVKGYHEAPVRLVLKEISDIERVLSRIAL 366

Query: 365 RSARPRDLARLRHAMQQLP----ELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKE 420
            +ARPRDL +LR A  Q+P     L  V+   K   L +L         L + L  AI E
Sbjct: 367 GTARPRDLVQLRQACSQIPFLRHALQPVIDNKKTKMLHQLYQELGDFKVLSERLSSAIVE 426

Query: 421 NPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGF 480
           NPPV++RDG VIA+G+  ELDE R + + A +FL  LE +ER++ GI TLK+GYN V G+
Sbjct: 427 NPPVLLRDGNVIAEGFDHELDELRKIRDHAGQFLIDLEIQEREQTGISTLKIGYNRVSGY 486

Query: 481 YIQVSRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFD 540
           YI+++R Q+   P HY+RRQTLKNAERYI  ELK  EDKVL+S+SRALA EK L+E + +
Sbjct: 487 YIELTRAQAEQAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFELILE 546

Query: 541 LLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMN 600
            L   +  LQ +++++AQ+D+L N A +A    + RP    E GI I  GRHPVVE +  
Sbjct: 547 ELRQDIASLQVMSSAIAQIDLLANFAYQARLKSWNRPEFSPEVGIKIIAGRHPVVESLSK 606

Query: 601 EPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRI 660
            P+  N   L+   RM IITGPNMGGKST+MRQTALI+L+A+ GS+VPA+SA +GP+DRI
Sbjct: 607 TPYTPNDTSLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAQSARLGPIDRI 666

Query: 661 FTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAE 720
           FTRIG++DDL+SG+STFMVEMTET+ ILH+AT  SLVLMDE+GRGTSTYDGLSLAWA   
Sbjct: 667 FTRIGSADDLSSGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLSLAWACVL 726

Query: 721 WLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGL 780
            L K I  + LFATHYFELTEL      + N H+ A E    +  +H VQ G AS+S+GL
Sbjct: 727 DLTKRIKCLCLFATHYFELTELGQE-AGIDNYHVTAKEMNGNLILLHKVQPGPASQSHGL 785

Query: 781 AVAGLAGVPKPVIKNARAKLQQLELLSSQPAET---------RKPSRVDIANQLSLIPEP 831
            VA LAG+P  VIK A+ +L+ LE    Q  +T           P    +   +  + + 
Sbjct: 786 QVAKLAGIPASVIKEAQKRLKILEKQQQQHLQTVVQNDLFDVVPPVVSPVTETIMEVEKT 845

Query: 832 SAVEQALAGVDPDQLTPRQALDMLYQLKKLL 862
           S V ++L  +D D L+PR+AL  LY+LK  L
Sbjct: 846 SPVLESLEQLDVDSLSPREALAQLYKLKDQL 876