Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

 Score =  120 bits (302), Expect = 3e-32
 Identities = 86/271 (31%), Positives = 148/271 (54%), Gaps = 17/271 (6%)

Query: 55  SLDATQMYLSEIGFSPLLTAEEEVLYARRALR-GDEAARKRMIESNLRLVVKISRRYSNR 113
           SLDA   Y+S +   P+L+ EEE   +R  L   + AA K+++ S+LR VV ++R YS  
Sbjct: 18  SLDA---YISAVHRIPVLSQEEEQALSRDYLEEANLAAAKKLVMSHLRFVVHVARGYSGY 74

Query: 114 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV 173
           GL L DLI+EGN+GL++AV++FDP++G R  ++A  WIR  +   ++   R ++  +   
Sbjct: 75  GLQLADLIQEGNIGLMKAVKRFDPDQGVRLVSFAVHWIRAEMHEFILKNWRIVK--VATT 132

Query: 174 KELNIYLRTARELSQRLDHEPTPE--EIALELDRPVDDVTKM-LRLNERISSVDTPIGGD 230
           K         R+  +RL      E   +A +L  P   V +M  RL+ R    + P+  D
Sbjct: 133 KAQRKLFFNLRKSKKRLGWMNAAEVSTVAKDLGVPEATVREMESRLSGRDIGFEAPVDAD 192

Query: 231 GD--KALLDILPDSHNADPEFSTQDDDIRESLLNWLDE----LNPKQKEVLARRFGLLGY 284
            D   A    L D   ADP  +  D+D  ++ +  L++    L+P+ ++++ RR+ L   
Sbjct: 193 DDAKPAPAAFLVDD-GADPYQNVADEDYADNQMETLNDALAHLDPRSRDIIQRRW-LDDS 250

Query: 285 EPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
             +TL+++  E  ++ ER+RQI+   ++++R
Sbjct: 251 SKATLQDLADEYGVSAERIRQIEANAMKKMR 281