Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp000427505 FW510-R12

 Score =  226 bits (575), Expect = 2e-63
 Identities = 117/274 (42%), Positives = 182/274 (66%), Gaps = 12/274 (4%)

Query: 46  REEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA----ARKRMIESNLR 101
           RE  DA  + L A +  L    F PL+  ++      RA+   EA    A+K M+E+NLR
Sbjct: 344 REAIDAEQEKLAAIERKL----FLPLIDIKD----INRAMASGEAKARRAKKEMVEANLR 395

Query: 102 LVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN 161
           LV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +
Sbjct: 396 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 455

Query: 162 QTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERIS 221
           Q RTIR+P+H+++ +N   R +R++ Q+   E TPEE+A E++ P D + K+L++ +   
Sbjct: 456 QARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMEMPEDKIRKVLKIAKEPI 515

Query: 222 SVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGL 281
           S++TPIG D D  L D + D + + P  S  +  + E++ + L  L P++ +VL  RFG+
Sbjct: 516 SMETPIGDDEDSHLGDFIEDGNASSPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGI 575

Query: 282 LGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
                 TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 576 DMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 609



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 25  TDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRA 84
           TD E  ++E +  +     +V        ++ D  +MY+ E+G   LLT E E+  A+R 
Sbjct: 77  TDDEAAAEEAVALLSAVDSEV-------GRTTDPVRMYMREMGTVELLTREGEIAIAKRI 129

Query: 85  LRG 87
             G
Sbjct: 130 EEG 132