Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RNA polymerase sigma factor RpoH from Xanthobacter sp. DMC5

 Score =  130 bits (326), Expect = 5e-35
 Identities = 89/277 (32%), Positives = 148/277 (53%), Gaps = 14/277 (5%)

Query: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL EI   P+L  +EE + A+     GD  A  +++ S+LRLV KI+  Y   GL + ++
Sbjct: 19  YLEEIRRFPMLEPQEEYMLAKSWREHGDRDAAHKLVTSHLRLVAKIAMGYRGYGLPISEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV-KELNIY 179
           I EGN+GL++AV++F+PE+GFR +TYA WWIR +I+  ++     +++      K+L   
Sbjct: 79  ISEGNVGLMQAVKRFEPEKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFN 138

Query: 180 LRTARELSQRLD----HEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPI-----GGD 230
           LR A+     L+         ++IA +L     DV  M R     +S++ PI     GG+
Sbjct: 139 LRKAKSQISALEEGDLRPDQVQQIATKLGVTEQDVVDMNRRLSGDASLNAPIREDSEGGE 198

Query: 231 GDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290
               L+D   D      E S +  + R +L   L  LN +++ +   R   L  +P TLE
Sbjct: 199 WQDWLVDERLDQEEQLAE-SEELANRRSALSGALSVLNDRERRIFEAR--RLSDDPMTLE 255

Query: 291 EVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEA 327
           ++  E  ++RERVRQI+V    ++++ ++ +   +EA
Sbjct: 256 DLAAEFGVSRERVRQIEVRAFEKVQKAVMDRVRQIEA 292