Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  405 bits (1041), Expect = e-118
 Identities = 213/325 (65%), Positives = 256/325 (78%), Gaps = 7/325 (2%)

Query: 12  EFDFEDEALEV---LETDAELTSDEELVAVEGASEDV----REEFDASAKSLDATQMYLS 64
           EFD +DE L +   ++T++       + +V   S++     + ++    ++LDATQ+YL+
Sbjct: 9   EFDIDDEVLLMEAGIDTESMSNEGPAVPSVRTKSKNSTALKQHKYIDYTRALDATQLYLN 68

Query: 65  EIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEG 124
           EIGFSPLLT EEEV +AR + +GD A RKRMIESNLRLVVKI+RRY NRGL+LLDLIEEG
Sbjct: 69  EIGFSPLLTPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEG 128

Query: 125 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAR 184
           NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLR AR
Sbjct: 129 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAAR 188

Query: 185 ELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHN 244
           EL+Q+LDHEP+PEEIA  L++PV +V +ML LNER+SSVD  +G D DK LLD L D   
Sbjct: 189 ELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRP 248

Query: 245 ADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVR 304
            DP    QDDD+ +S+  WL EL  KQ+EV+ RRFGL G+E STLE+VG EI LTRERVR
Sbjct: 249 TDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVR 308

Query: 305 QIQVEGLRRLREILVKQGLNMEALF 329
           QIQVEGL+RLREIL K GL+ E+LF
Sbjct: 309 QIQVEGLKRLREILEKNGLSSESLF 333