Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. SCN45

 Score =  210 bits (535), Expect = 8e-59
 Identities = 100/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K MIE+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 537 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 596

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R+  Q    EP    +A +++ P D +
Sbjct: 597 IRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKI 656

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K++++ +   S++TPIG D D  L D + DS N  P  +     +R+ + + LD L P+
Sbjct: 657 RKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPR 716

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 717 EAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLK 761



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 30  TSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDE 89
           T +E     E A   V  EF    ++ D  +MY+ E+G   LLT E E+  A+R + G  
Sbjct: 232 TVEEAEEEAEAALSTVDSEF---GRTTDPVRMYMREMGTVELLTREGEIEIAKR-IEGGL 287

Query: 90  AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKF 135
            A    I ++   +  I        L +   I EG + +   V+ F
Sbjct: 288 MAMMEAISASPATIAAI--------LEMAATIREGKVVISTIVDGF 325