Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 784 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. OAS795

 Score =  210 bits (535), Expect = 9e-59
 Identities = 100/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K MIE+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 545 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 604

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R+  Q    EP    +A +++ P D +
Sbjct: 605 IRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKI 664

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K++++ +   S++TPIG D D  L D + DS N  P  +     +R+ + + LD L P+
Sbjct: 665 RKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPR 724

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 725 EAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLK 769



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 30  TSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDE 89
           T +E     E A   V  EF    ++ D  +MY+ E+G   LLT E E+  A+R + G  
Sbjct: 240 TVEEAEEEAEAALSTVDSEF---GRTTDPVRMYMREMGTVELLTREGEIEIAKR-IEGGL 295

Query: 90  AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKF 135
            A    I ++   + +I R  ++        I EG + +   V+ F
Sbjct: 296 MAMMEAISASPATIAEILRLAAD--------IREGKVVISTVVDGF 333