Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  218 bits (554), Expect = 4e-61
 Identities = 120/293 (40%), Positives = 183/293 (62%), Gaps = 13/293 (4%)

Query: 26  DAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL 85
           D  L SD+  VA       VRE+ +   +S+   QM   E      L+ E     +RR  
Sbjct: 329 DKVLASDKPYVA------KVREQEEEIRRSIQKLQMIEQETS----LSVERIKDISRRMS 378

Query: 86  RGDEAAR---KRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 142
            G+  AR   K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++
Sbjct: 379 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 438

Query: 143 FSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALE 202
           FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EP PEE+A  
Sbjct: 439 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAER 498

Query: 203 LDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLN 262
           +  P D + K+L++ +   S++TPIG D D  L D + D+    P  S     ++ +  +
Sbjct: 499 MQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRD 558

Query: 263 WLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
            L  L P++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 559 VLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611



 Score = 34.3 bits (77), Expect = 9e-06
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 23  LETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYAR 82
           L  D  +T ++   A   A   V  E     ++ D  +MY+ E+G   LLT E E+  A+
Sbjct: 67  LSDDTTITDEDAAEAAAAALSSVESEI---GRTTDPVRMYMREMGTVELLTREGEIDIAK 123

Query: 83  RALRGDEAARKRMIE--SNLRLVVKISRRYSNRGLALLDLI 121
           R   G    +  + E    +  +++   R     L L DLI
Sbjct: 124 RIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLI 164