Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., RNA polymerase sigma factor RpoH from Sphingobium sp. HT1-2

 Score =  142 bits (358), Expect = 1e-38
 Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 19/273 (6%)

Query: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YLSEI   PLLT E+E + A+R     D  A  +++ S+LRLV KI+  Y   GL + +L
Sbjct: 22  YLSEIRKFPLLTPEQEYMLAKRYEEHQDPEAAAQLVTSHLRLVAKIAMGYRGYGLPVSEL 81

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV-VKELNIY 179
           I EGN+GL++ V+KF+ ERGFR +TYA WWIR +I+  ++     +++      K+L   
Sbjct: 82  ISEGNIGLMQGVKKFEAERGFRLATYAMWWIRASIQEFILRSWSLVKMGTTASQKKLFFN 141

Query: 180 LRTARELSQRL-DHEPTPEE---IALELDRPVDDVTKMLRLNERI-----SSVDTPIGGD 230
           LR  +   +   D +  PE+   IA +L    DDV  M   N R+     +S++ P+  D
Sbjct: 142 LRRMKNNIEAFEDGDLRPEDVTKIATDLGVSEDDVVSM---NRRMAMGGDTSLNVPMRED 198

Query: 231 GDKALLDILPDSHNADPEFSTQDDD---IRESLLNWLDELNPKQKEVLARRFGLLGYEPS 287
           GD    D L D+     E   ++ +     E L+  + +LN ++K +LA R   L  EP 
Sbjct: 199 GDGQWQDWLQDTDPLQDERVAEEQERTQRHEMLVEAMTDLNDREKHILAER--RLAEEPK 256

Query: 288 TLEEVGREINLTRERVRQIQVEGLRRLREILVK 320
           TLEE+ +   ++RERVRQI+V    +L++ +++
Sbjct: 257 TLEELSQVYGVSRERVRQIEVRAFEKLQKAMMR 289