Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  411 bits (1057), Expect = e-119
 Identities = 223/332 (67%), Positives = 260/332 (78%), Gaps = 14/332 (4%)

Query: 9   KVEEFDFEDEALE-----VLETDAELTSDEELV------AVEGASEDVREEFDASAKSLD 57
           +V EFD +D+ L      VLETD  + SDE  V      A  G+S    +  D S ++LD
Sbjct: 6   EVPEFDIDDDVLLMETGIVLETD--VVSDEPAVSSVRTRAKSGSSLKQHKYIDYS-RALD 62

Query: 58  ATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLAL 117
           ATQ+YL+EIGFSPLL+ EEEV +AR + +GD A RKRMIESNLRLVVKI+RRY NRGL+L
Sbjct: 63  ATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSL 122

Query: 118 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELN 177
           LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN
Sbjct: 123 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELN 182

Query: 178 IYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLD 237
           +YLR AREL+Q+LDHEP+PEEIA  L++PV +V +ML LNER+SSVD  +G D DK LLD
Sbjct: 183 VYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKTLLD 242

Query: 238 ILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREIN 297
            L D    DP    QDDD+ +S+  WL EL  KQ+EV+ RRFGL G+E STLE+VG EI 
Sbjct: 243 TLTDDRPTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLEDVGLEIG 302

Query: 298 LTRERVRQIQVEGLRRLREILVKQGLNMEALF 329
           LTRERVRQIQVEGL+RLREIL K GL+ E+LF
Sbjct: 303 LTRERVRQIQVEGLKRLREILEKNGLSSESLF 334