Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  215 bits (548), Expect = 2e-60
 Identities = 111/261 (42%), Positives = 170/261 (65%), Gaps = 3/261 (1%)

Query: 58  ATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIESNLRLVVKISRRYSNRG 114
           A Q  L ++     LT  E     RR   G+  AR   K M+E+NLRLV+ I+++Y+NRG
Sbjct: 342 ACQQKLIDLETETGLTVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 401

Query: 115 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVK 174
           L  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++
Sbjct: 402 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 461

Query: 175 ELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKA 234
            +N   R +R++ Q +  EPTPEE+   ++ P D + K+L++ +   S++TPIG D D  
Sbjct: 462 TINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSH 521

Query: 235 LLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGR 294
           L D + DS    P      + ++E+  + L  L  ++ +VL  RFG+      TLEEVG+
Sbjct: 522 LGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGK 581

Query: 295 EINLTRERVRQIQVEGLRRLR 315
           + ++TRER+RQI+ + LR+LR
Sbjct: 582 QFDVTRERIRQIEAKALRKLR 602



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 18  EALEVLETDAELTSDEELVAVEGASE-DVREEFDASAKSLDATQMYLSEIGFSPLLTAEE 76
           +AL + E D +  + EE  A   A E D+        ++ D  +MY+ E+G   LLT E 
Sbjct: 65  DALLLAEADTDEAAAEEAAAALAAVETDI-------GRTTDPVRMYMREMGTVELLTREG 117

Query: 77  EVLYARRALRG 87
           E+  A+R   G
Sbjct: 118 EIEIAKRIEEG 128