Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  217 bits (552), Expect = 3e-61
 Identities = 115/263 (43%), Positives = 169/263 (64%), Gaps = 3/263 (1%)

Query: 53  AKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSN 112
           ++SLD    YL EIG   LLT +EEV  A+R   GD+ A +++ ++NLR VV ++++Y N
Sbjct: 15  SQSLDK---YLQEIGKVDLLTPDEEVSLAQRIKEGDQFALEKLTKANLRFVVSVAKQYQN 71

Query: 113 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV 172
           +GL+L DLI EGNLGLI+A ++FD  RGF+F +YA WWIRQ+I +AL  Q+R +RLP++ 
Sbjct: 72  QGLSLGDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNR 131

Query: 173 VKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGD 232
           V  LN   ++  EL Q+ + EP+PEEIA  L+    +V   L+++ R  SVD P     +
Sbjct: 132 VGSLNKISKSFSELEQKFEREPSPEEIAEVLELTTAEVVDTLKISGRHVSVDAPFVQGEE 191

Query: 233 KALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEV 292
             LLD+L +     P+    +D +R+ +   L  L  ++ +V+   FGL G    TLEE+
Sbjct: 192 NRLLDVLENEDEESPDMGLMNDSLRKEVQRALSTLTKREADVITLYFGLNGEHSLTLEEI 251

Query: 293 GREINLTRERVRQIQVEGLRRLR 315
           G + NLTRERVRQI+ + +RRLR
Sbjct: 252 GEKFNLTRERVRQIKEKAIRRLR 274