Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  208 bits (529), Expect = 4e-58
 Identities = 99/225 (44%), Positives = 155/225 (68%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K MIE+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 499 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 558

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R+  Q    EP    +A +++ P D +
Sbjct: 559 IRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEMPEDKI 618

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K++++ +   S++TPIG D D  L D + D  N  P  +     +RE +   LD L P+
Sbjct: 619 RKIMKIAKEPISMETPIGDDDDSHLGDFIEDQANTAPIEAAMQAGLREVVKEILDSLTPR 678

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + +R+L+
Sbjct: 679 EAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLK 723



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 30  TSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           T +E     E A   V  EF    ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 204 TEEEAEEEAEAALSTVDSEF---GRTTDPVRMYMREMGTVELLTREGEIEIAKR 254