Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., RNA polymerase sigma factor RpoH from Magnetospirillum magneticum AMB-1

 Score =  145 bits (366), Expect = 1e-39
 Identities = 95/276 (34%), Positives = 154/276 (55%), Gaps = 12/276 (4%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRALR-GDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL +I   P+L  EEE L A+R    GD  A  R++ S+LRLV KI+  Y   GL L +L
Sbjct: 19  YLQDIRKFPMLPPEEEYLLAKRFREHGDLPAANRLVTSHLRLVAKIAMGYRGYGLPLGEL 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV-KELNIY 179
           I EGN+G+++AV +FDPERGFR +TYA WWIR  I+  +++    +++      K+L   
Sbjct: 79  ISEGNVGMMQAVRRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFN 138

Query: 180 LRTARELSQRLDHEPTPEE----IALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA 234
           LR  +   Q ++      E    IA +L+   D+V  M  RL+    S++ P+  +G+  
Sbjct: 139 LRKLKGQMQAIEEGDMSAENVAKIATKLEVTEDEVVTMNRRLSSPDHSLNAPVRAEGEGE 198

Query: 235 LLDILPDSH-NADPEFSTQDD--DIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEE 291
             D L D H + + E   +++    R+ L + L+ LN +++ +L +R   L  +P+TLE+
Sbjct: 199 WQDWLVDDHEDQETELGEREELGQRRQMLTSALEALNDRERAILIQR--RLTEDPATLED 256

Query: 292 VGREINLTRERVRQIQVEGLRRLREILVKQGLNMEA 327
           + +   ++RERVRQI+V    +L++ +       EA
Sbjct: 257 LSQRYGISRERVRQIEVRAFEKLQKSVKSASAQAEA 292