Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., RNA polymerase sigma factor RpoH from Magnetospirillum magneticum AMB-1

 Score =  144 bits (363), Expect = 3e-39
 Identities = 95/272 (34%), Positives = 159/272 (58%), Gaps = 13/272 (4%)

Query: 57  DATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA-ARKRMIESNLRLVVKISRRYSNRGL 115
           D    YL +I   P+L  EEE + A+R +  ++  A  R++ S+LRLV KI+  Y + GL
Sbjct: 13  DGLAKYLRDIKEFPVLAPEEEFMLAKRWVDYEDTDAAHRLVTSHLRLVAKIALGYRHYGL 72

Query: 116 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVK 174
            + DLI EGN+GL+RAV+KF+P+RGFR +TYA WWI+ ++   ++N    +++  +   K
Sbjct: 73  PVADLISEGNIGLMRAVKKFEPDRGFRLATYAMWWIKASLNEFVLNSWSMVKIGTLAAQK 132

Query: 175 ELNIYLRTARELSQRLD-HEPTPEE---IALELDRPVDDVTKM-LRLNERISSVDTPIGG 229
           +L   LR  +   + L+  +  PE    IA ELD    DV  M  R+  R SS++ P+ G
Sbjct: 133 KLFFNLRRIKSRLRLLEAGDLAPEHVATIARELDVDERDVVAMNRRMAGRDSSLNAPV-G 191

Query: 230 DGDKALLDILPD-SHNADPEFSTQDDDIRESLL--NWLDELNPKQKEVLARRFGLLGYEP 286
           +G   + D++ D + N +  +  +++  +  +L    LD L  +++EV   R   L  +P
Sbjct: 192 EGGTEIQDLMADEADNQETAYGKREELSKGRVLIARALDSLTEREREVFVER--RLRDDP 249

Query: 287 STLEEVGREINLTRERVRQIQVEGLRRLREIL 318
            TLEE+G    ++RER+RQI+V+   ++R+++
Sbjct: 250 VTLEELGGRYGVSRERIRQIEVKAFEKVRDLV 281