Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Magnetospirillum magneticum AMB-1

 Score =  221 bits (562), Expect = 5e-62
 Identities = 111/263 (42%), Positives = 174/263 (66%)

Query: 53  AKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSN 112
           A  + AT   +S     P+      V   +R  R    A+K MIE+NLRLV+ I+++Y+N
Sbjct: 403 AADIRATIADISAEAGLPISEYRRIVQTVQRGEREASRAKKEMIEANLRLVISIAKKYTN 462

Query: 113 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV 172
           RGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+
Sbjct: 463 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 522

Query: 173 VKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGD 232
           ++ +N  +RT+R++   +  EPTPEE+A +L  P++ V K+L++ +   S++TPIG + D
Sbjct: 523 IETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEED 582

Query: 233 KALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEV 292
             L D + D +   P  +    ++RE+    L  L P+++ VL  RFG+      TLEEV
Sbjct: 583 SHLGDFIEDKNAVLPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEV 642

Query: 293 GREINLTRERVRQIQVEGLRRLR 315
           G++ ++TRER+RQI+ + LR+L+
Sbjct: 643 GQQFSVTRERIRQIEAKALRKLK 665



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 44/100 (44%)

Query: 3   VSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMY 62
           + +T+  + E        E  E +    ++EE    EG S     + +   ++ D  +MY
Sbjct: 63  IEDTMAMLSELGINVVESEEGEDNTPEAAEEETTETEGYSGAGNVDEEDLGRTDDPVRMY 122

Query: 63  LSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL 102
           L E+G   LL+ E E+  A+R   G E     + ES L L
Sbjct: 123 LREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTL 162