Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  456 bits (1174), Expect = e-133
 Identities = 234/319 (73%), Positives = 275/319 (86%), Gaps = 3/319 (0%)

Query: 11  EEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSP 70
           E+ +F++  +E    D +  S+EE    + A E++  +  A+ + LDATQ+YL EIG+SP
Sbjct: 13  EDAEFDENGVEAF--DEKALSEEEPSDNDLAEEELLSQ-GATQRVLDATQLYLGEIGYSP 69

Query: 71  LLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIR 130
           LLTAEEEV +ARRALRGD A+R+RMIESNLRLVVKI+RRY NRGLALLDLIEEGNLGLIR
Sbjct: 70  LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129

Query: 131 AVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRL 190
           AVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIH+VKELN+YLRTARELS +L
Sbjct: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189

Query: 191 DHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFS 250
           DHEP+ EEIA +LD+PVDDV++MLRLNERI+SVDTP+GGD +KALLDIL D     PE +
Sbjct: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDT 249

Query: 251 TQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEG 310
           TQDDD+++S++ WL ELN KQ+EVLARRFGLLGYE +TLE+VGREI LTRERVRQIQVEG
Sbjct: 250 TQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEG 309

Query: 311 LRRLREILVKQGLNMEALF 329
           LRRLREIL  QGLN+EALF
Sbjct: 310 LRRLREILQTQGLNIEALF 328