Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  209 bits (533), Expect = 1e-58
 Identities = 115/289 (39%), Positives = 179/289 (61%), Gaps = 3/289 (1%)

Query: 30  TSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDE 89
           TS+    A    ++   E+    A+ +      L +I     LT E+     RR   G+ 
Sbjct: 313 TSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEA 372

Query: 90  AAR---KRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTY 146
            AR   K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTY
Sbjct: 373 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 432

Query: 147 ATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRP 206
           ATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+A  +  P
Sbjct: 433 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 492

Query: 207 VDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDE 266
            D + K+ ++ +   S++TPIG D D  L D + D+    P  S   + +R +  + L  
Sbjct: 493 EDKIRKVPKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 552

Query: 267 LNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           L  ++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 553 LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 27  AELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           AE T+  +  A E A++ +        ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 68  AENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 124