Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score =  211 bits (537), Expect = 4e-59
 Identities = 105/243 (43%), Positives = 164/243 (67%), Gaps = 4/243 (1%)

Query: 77  EVLYARRALRGDEA----ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAV 132
           E+  A R +   EA    A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV
Sbjct: 359 EIKEANREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 418

Query: 133 EKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDH 192
           +KF+  RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  
Sbjct: 419 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 478

Query: 193 EPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQ 252
           EP PEE+A  ++ P D + K+L++ +   S++TPIG D D  L D + D+    P  +  
Sbjct: 479 EPQPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPVDAAT 538

Query: 253 DDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLR 312
            + ++E     L  L  ++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR
Sbjct: 539 GESLKEVTDEILAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 598

Query: 313 RLR 315
           +LR
Sbjct: 599 KLR 601



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 10  VEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFS 69
           ++ ++   +A E+L  D  +T +E       A   V  EF    ++ D  +MY+ E+G  
Sbjct: 54  IQVYETTPDADELLMNDESVTDEEAAEEAAAALASVDSEF---GRTTDPVRMYMREMGSV 110

Query: 70  PLLTAEEEVLYARRALRG 87
            LLT E E+  A+R   G
Sbjct: 111 ELLTREGEIDIAKRIEEG 128