Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Erwinia tracheiphila SCR3

 Score =  446 bits (1146), Expect = e-130
 Identities = 231/320 (72%), Positives = 271/320 (84%), Gaps = 4/320 (1%)

Query: 11  EEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSP 70
           E+ +F++   EV +  A + +D    A    +ED   +  A+ + LDATQ+YL EIG+SP
Sbjct: 13  EDAEFDENGAEVFDEKAFVGNDP---ADNDIAEDELLQQGATQRVLDATQLYLGEIGYSP 69

Query: 71  LLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIR 130
           LLTAEEEV +ARRALRGD  +R+RMIESNLRLVVKI+RRYSNRGLALLDLIEEGNLGLIR
Sbjct: 70  LLTAEEEVFFARRALRGDIPSRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIR 129

Query: 131 AVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRL 190
           AVEKFDPE+GFRFSTYATWWIRQTIERA+MNQTRTIRLPIH+VKELN+YLRTAREL+ +L
Sbjct: 130 AVEKFDPEKGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELAHKL 189

Query: 191 DHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTP-IGGDGDKALLDILPDSHNADPEF 249
           DHEP+ EEIA +LD+PVDDV++MLRLNERI+SVDT  +GGD DKALLDIL D  +  PE 
Sbjct: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTTLLGGDSDKALLDILADEKDNGPED 249

Query: 250 STQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVE 309
            TQDDD+++S++ WL ELN KQ+EVLARRFGLLGYE +TLE+VG EI LTRERVRQIQVE
Sbjct: 250 CTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGSEIGLTRERVRQIQVE 309

Query: 310 GLRRLREILVKQGLNMEALF 329
           GLRRLREIL  QGLN+EALF
Sbjct: 310 GLRRLREILQAQGLNIEALF 329