Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., RNA polymerase, sigma 70 subunit, RpoD from Enterobacter asburiae PDN3

 Score =  212 bits (540), Expect = 2e-59
 Identities = 115/277 (41%), Positives = 175/277 (63%), Gaps = 7/277 (2%)

Query: 42  SEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIES 98
           SE + +  D   + L        E G    LT E+     RR   G+  AR   K M+E+
Sbjct: 374 SEKLHDVKDDVHRGLQKLHQIEEETG----LTIEQVKDINRRMSIGEAKARRAKKEMVEA 429

Query: 99  NLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA 158
           NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+
Sbjct: 430 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 489

Query: 159 LMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNE 218
           + +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+A  +  P D + K+L++ +
Sbjct: 490 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 549

Query: 219 RISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARR 278
              S++TPIG D D  L D + D+    P  S   + +R +  + L  L  ++ +VL  R
Sbjct: 550 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 609

Query: 279 FGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           FG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 610 FGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 646



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 27  AELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           AE +++ +  A E A++ +        ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 113 AETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 169