Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Dickeya dianthicola ME23

 Score =  448 bits (1153), Expect = e-131
 Identities = 230/322 (71%), Positives = 274/322 (85%), Gaps = 9/322 (2%)

Query: 11  EEFDFEDEALEVLETDA---ELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIG 67
           E+ +F++  ++V +  A   E TSD +L+  E  S+   +      + LDATQ+YL EIG
Sbjct: 13  EDAEFDENGVDVFDDKALAEEETSDSDLLDEELLSQGTAQ------RVLDATQLYLGEIG 66

Query: 68  FSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLG 127
           +SPLLTAEEEV +ARRALRGD ++R+RMIESNLRLVVKI+RRY+NRGLALLDLIEEGNLG
Sbjct: 67  YSPLLTAEEEVYFARRALRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLG 126

Query: 128 LIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELS 187
           LIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIH+VKELN+YLRTARELS
Sbjct: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186

Query: 188 QRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADP 247
            +LDHEP+ EEIA  LD+PVDDV +MLRLNERI+SVDTP+GGD +KALLDIL D  +  P
Sbjct: 187 HKLDHEPSAEEIAERLDKPVDDVNRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGP 246

Query: 248 EFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQ 307
           E +TQD+D++++++ WL ELN KQ+EVLARRFGLLGYE +TLE+VGREI LTRERVRQIQ
Sbjct: 247 EDTTQDNDMKQNIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306

Query: 308 VEGLRRLREILVKQGLNMEALF 329
           VEGLRRLREIL  QGL++E LF
Sbjct: 307 VEGLRRLREILQVQGLDIEELF 328