Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score =  216 bits (551), Expect = 9e-61
 Identities = 117/276 (42%), Positives = 176/276 (63%), Gaps = 7/276 (2%)

Query: 43  EDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIESN 99
           E +RE  D   + L   Q    E G    LT E+     RR   G+  AR   K M+E+N
Sbjct: 326 EKLREVEDDVHRGLQKLQQIEDETG----LTIEQVKDINRRMSIGEAKARRAKKEMVEAN 381

Query: 100 LRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL 159
           LRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++
Sbjct: 382 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 441

Query: 160 MNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNER 219
            +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+A  +  P D + K+L++ + 
Sbjct: 442 ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKE 501

Query: 220 ISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRF 279
             S++TPIG D D  L D + D+    P  S   + +R +  + L  L  ++ +VL  RF
Sbjct: 502 PISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRF 561

Query: 280 GLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           G+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 562 GIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 597



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 27  AELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           AE T+DE+  A E A++ +        ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 68  AENTADED--AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122