Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Dickeya dadantii 3937

 Score =  447 bits (1151), Expect = e-130
 Identities = 235/331 (70%), Positives = 276/331 (83%), Gaps = 17/331 (5%)

Query: 5   NTVTKVEEFD------FEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDA 58
           N + +  EFD      F+D+AL   ET      DEEL++ +G ++ V          LDA
Sbjct: 9   NELHEDAEFDENGIDVFDDKALAEEETSDSDQLDEELLS-QGTAQRV----------LDA 57

Query: 59  TQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALL 118
           TQ+YL EIG+SPLLTAEEEV +ARRALRGD ++R+RMIESNLRLVVKI+RRY+NRGLALL
Sbjct: 58  TQLYLGEIGYSPLLTAEEEVYFARRALRGDVSSRRRMIESNLRLVVKIARRYNNRGLALL 117

Query: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNI 178
           DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIH+VKELN+
Sbjct: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177

Query: 179 YLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDI 238
           YLRTARELS +LDHEP+ EEIA  LD+PVDDV +MLRLNERI+SVDTP+GGD +KALLDI
Sbjct: 178 YLRTARELSHKLDHEPSAEEIAERLDKPVDDVNRMLRLNERITSVDTPLGGDSEKALLDI 237

Query: 239 LPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINL 298
           L D  +  PE +TQD+D++++++ WL ELN KQ+EVLARRFGLLGYE +TLE+VGREI L
Sbjct: 238 LADEKDNGPEDTTQDNDMKQNIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297

Query: 299 TRERVRQIQVEGLRRLREILVKQGLNMEALF 329
           TRERVRQIQVEGLRRLREIL  QGL++E LF
Sbjct: 298 TRERVRQIQVEGLRRLREILQVQGLDIEELF 328