Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  220 bits (561), Expect = 3e-62
 Identities = 115/263 (43%), Positives = 172/263 (65%), Gaps = 3/263 (1%)

Query: 53  AKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSN 112
           ++SLD    YL EIG   LLTA+EEV+ A+R   GD+ A +++ ++NLR VV ++++Y N
Sbjct: 15  SQSLDK---YLQEIGKVDLLTADEEVVLAKRIREGDQLALEKLTKANLRFVVSVAKQYQN 71

Query: 113 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV 172
           +GL+L DLI EGNLGLI+A ++FD  RGF+F +YA WWIRQ+I +AL  Q+R +RLP++ 
Sbjct: 72  QGLSLGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNR 131

Query: 173 VKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGD 232
           V  LN   +T  EL QR + EP+PEE+A  L+    +V   ++++ R  S+D P     +
Sbjct: 132 VGSLNKISKTFSELEQRFEREPSPEELAEVLEVTAGEVVDTMKISGRHVSMDAPFVQGEE 191

Query: 233 KALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEV 292
            +LLD+L +     P+    +D +R+ +   L  L  ++ +V+   FGL G    TLEE+
Sbjct: 192 NSLLDVLENDGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHAMTLEEI 251

Query: 293 GREINLTRERVRQIQVEGLRRLR 315
           G + NLTRERVRQI+ + +RRLR
Sbjct: 252 GEKFNLTRERVRQIKEKAIRRLR 274