Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., RNA polymerase sigma factor RpoD from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  218 bits (555), Expect = 3e-61
 Identities = 102/225 (45%), Positives = 162/225 (72%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 410 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 469

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V
Sbjct: 470 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 529

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG + D  L D + D +   P  +    ++RE+    L  L P+
Sbjct: 530 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPR 589

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           ++ VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 590 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 634



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 23/77 (29%), Positives = 36/77 (46%)

Query: 24  ETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           E DA+     ++ A  G +        A  ++ D  +MYL E+G   LL+ E E+  A+R
Sbjct: 76  EEDAQEQQSTDVAAAAGTAVAETPAKSAYDRTDDPVRMYLREMGSVELLSREGEIAIAKR 135

Query: 84  ALRGDEAARKRMIESNL 100
              G +A    + ES L
Sbjct: 136 IEAGRDAMISGLCESAL 152