Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., RNA polymerase sigma factor RpoH from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  143 bits (361), Expect = 5e-39
 Identities = 96/267 (35%), Positives = 153/267 (57%), Gaps = 12/267 (4%)

Query: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL+EI   P+LT +EE + A+R +   D  A  R++ S+LRLV KI+  Y   GL + ++
Sbjct: 19  YLTEIRKFPMLTKDEEFMLAKRWSEHQDPEAAHRLVTSHLRLVAKIAMGYRGYGLPIGEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV-KELNIY 179
           I EGN+GL++AV+KFD ++GFR +TYA WWIR +I+  ++     +++      K+L   
Sbjct: 79  ISEGNVGLMQAVKKFDADKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFN 138

Query: 180 LRTAR-ELSQRLDHEPTPEE---IALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKAL 235
           LR A+ ++S   + +  PE    IA +L    ++VT M R     +S++ P+  DG+   
Sbjct: 139 LRKAKSQISAFEEGDLHPEHLAAIATKLGVTEEEVTNMNRRLGGDASLNAPLRADGESEW 198

Query: 236 LDILPDSHNADPEFSTQDDD---IRESLL-NWLDELNPKQKEVLARRFGLLGYEPSTLEE 291
            D L D      E    DD+   IR SLL   ++EL  ++K +L  R   L  +P TLEE
Sbjct: 199 QDWLADDTAVSQETQLADDEEKGIRMSLLQEAMEELTDREKHILTER--RLKDDPVTLEE 256

Query: 292 VGREINLTRERVRQIQVEGLRRLREIL 318
           +  +  ++RERVRQI+V    +L++ +
Sbjct: 257 LAGQYGVSRERVRQIEVRAFEKLQKAM 283