Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

 Score =  138 bits (347), Expect = 2e-37
 Identities = 92/274 (33%), Positives = 150/274 (54%), Gaps = 13/274 (4%)

Query: 52  SAKSLDATQMYLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRY 110
           S  S ++   Y+++    P+LTAE+E + A+     GD  A  R++ S+LRLVVKI+  Y
Sbjct: 9   SPDSGESLSRYINDTHRYPVLTAEDEYMLAKAWTEHGDVDAAHRLVTSHLRLVVKIAGGY 68

Query: 111 SNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI 170
              GL L DLI EGNLGL+ AV+KF+PERGFR STYA WWI+ +I+  ++     +++  
Sbjct: 69  RGYGLPLSDLIAEGNLGLMTAVKKFEPERGFRLSTYAMWWIKASIQDYILRSWSLVKIGT 128

Query: 171 HVVKELNIYL--RTARELSQRLD---HEPTPEEIALELDRPVDDVTKM-LRLNERISSVD 224
              ++   +   R  R+L +      H  +   IA +L  P DDV  M  R++  ++S++
Sbjct: 129 TAAQKKLFFSLGRLKRKLGEYGSGDLHPDSVTSIATDLSVPEDDVVAMNRRMSGPVASLN 188

Query: 225 TPIGGDGDKA-LLDILPDSHNADPEFSTQDDDIRES---LLNWLDELNPKQKEVLARRFG 280
            P+  DGD     D+L D   +  E   +  + R+    L   +  LN +++++L  R  
Sbjct: 189 APMSADGDSGEWQDLLADERPSVEESLVERGEARQRSALLHEAMAVLNDRERDILTSR-- 246

Query: 281 LLGYEPSTLEEVGREINLTRERVRQIQVEGLRRL 314
            L   P TLE++     ++RER+RQI+ +   ++
Sbjct: 247 RLSDSPLTLEDLSVRYGVSRERIRQIEEKAFEKV 280