Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

 Score =  134 bits (336), Expect = 4e-36
 Identities = 93/279 (33%), Positives = 152/279 (54%), Gaps = 13/279 (4%)

Query: 51  ASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDE-AARKRMIESNLRLVVKISRR 109
           A  +S +  Q+YL +      LT E+E   A R     E AA  +++ S+LRLVVK++R 
Sbjct: 23  AEPRSAEPMQLYLQDARKYQYLTPEQEHDLAVRWHDNQEPAALDKLVGSHLRLVVKMARG 82

Query: 110 YSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLP 169
           Y   GL L DL+ EGN+G+++A +KFDP +GFRF+TYA+WW+R  I+  +++    +++ 
Sbjct: 83  YLGYGLPLSDLVAEGNVGVMQAAQKFDPGKGFRFATYASWWVRAAIQEYVLHNWSLVKIG 142

Query: 170 IHV-VKELNIYLRTARELSQRLD----HEPTPEEIALELDRPVDDVTKMLRLNERISSVD 224
                K+L   LR  +   Q L+         E IA EL+    +V +M R      S++
Sbjct: 143 TTAGQKKLFFSLRRLKARMQELESGDLSPEAVESIATELNVSKAEVVEMNRRLGNDRSLN 202

Query: 225 TPIGGDGDKALLDILPDSHNADPEFSTQDDDIR----ESLLNWLDELNPKQKEVLARRFG 280
             +  DGD    D+L D    D E +  D + R    + L   L  L+ +++++L  R  
Sbjct: 203 VGLSEDGDAEWQDLLADD-RPDQETTLADSEERRRRQQFLKLGLGVLDDRERKILIAR-- 259

Query: 281 LLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILV 319
            L  EP TLEE+ +  +++RERVRQ++V    +L++ ++
Sbjct: 260 RLRDEPLTLEELSQTFHVSRERVRQLEVRAFEKLQKAVI 298