Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., RNA polymerase sigma factor RpoD from Azospirillum sp. SherDot2

 Score =  220 bits (560), Expect = 9e-62
 Identities = 108/269 (40%), Positives = 177/269 (65%)

Query: 47  EEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKI 106
           E++D+  +    +   ++E    P+      V   ++  +    A+K M+E+NLRLV+ I
Sbjct: 395 EKYDSEIRKTRESISNVAEEARLPINEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISI 454

Query: 107 SRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI 166
           +++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTI
Sbjct: 455 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 514

Query: 167 RLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTP 226
           R+P+H+++ +N  +RT+R++   +  EPTPEE+A  L  P++ V K+L++ +   S++TP
Sbjct: 515 RIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPISLETP 574

Query: 227 IGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEP 286
           IG + D  L D + D +   P  +    ++RE+    L  L P+++ VL  RFG+     
Sbjct: 575 IGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD 634

Query: 287 STLEEVGREINLTRERVRQIQVEGLRRLR 315
            TLEEVG++ N+TRER+RQI+ + LR+L+
Sbjct: 635 HTLEEVGQQFNVTRERIRQIEAKALRKLK 663



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 20  LEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVL 79
           +E  E D+E  S E     EG S    ++ D   ++ D  +MYL E+G   LL+ E E+ 
Sbjct: 78  VESEEQDSE-NSGEGAGEGEGRSSGNLDDDDIG-RTDDPVRMYLREMGSVELLSREGEIA 135

Query: 80  YARRALRGDEAARKRMIESNLRL 102
            A+R   G E     + ES L +
Sbjct: 136 IAKRIEAGREMMIGAICESPLTI 158