Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Sigma-70 from Alteromonas macleodii MIT1002

 Score =  211 bits (537), Expect = 4e-59
 Identities = 101/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 372 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 431

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE++  +  P D +
Sbjct: 432 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMLMPEDKI 491

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + DS    P  S     ++++    L  L  +
Sbjct: 492 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKDATQEVLAGLTAR 551

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 552 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 596



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 28  ELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           E  +DE+  A E A++ +        ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 69  EANADED--AAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIAKR 122