Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Alteromonas macleodii MIT1002

 Score =  454 bits (1167), Expect = e-132
 Identities = 234/324 (72%), Positives = 275/324 (84%), Gaps = 2/324 (0%)

Query: 8   TKVEEFDFEDEALEVLETDAELTSDEELVA-VEGASEDVREEFDASAKSLDATQMYLSEI 66
           TK  E   +D+ +EV++  A++ +DE L    +  ++D     D   K+LDATQ+YL EI
Sbjct: 5   TKALESTPQDD-VEVIDMPADMKADETLTNDADLENDDAIFSQDDQPKNLDATQLYLGEI 63

Query: 67  GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL 126
           GFSPLLTAEEEV +ARR+L+G EA+RKRMI SNLRLVVKI+RRY+NRGLALLDLIEEGNL
Sbjct: 64  GFSPLLTAEEEVYFARRSLKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNL 123

Query: 127 GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAREL 186
           GLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLR +REL
Sbjct: 124 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRASREL 183

Query: 187 SQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNAD 246
           SQ+LDHEPT EEIAL LD+PV+DVTKMLRLNERI+SVDTPIGG+ DKALLDI+ D     
Sbjct: 184 SQKLDHEPTAEEIALALDKPVEDVTKMLRLNERITSVDTPIGGENDKALLDIIADEKEFS 243

Query: 247 PEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQI 306
           PE S QD DI+ +++ WL+ELNPKQ+EVLARRFGL+GYEPSTLE+VG EI LTRERVRQI
Sbjct: 244 PEESLQDSDIKSNIVTWLEELNPKQREVLARRFGLMGYEPSTLEDVGAEIGLTRERVRQI 303

Query: 307 QVEGLRRLREILVKQGLNMEALFN 330
           QVE LRRLR++L  QGL++E LF+
Sbjct: 304 QVEALRRLRDMLGHQGLSLENLFD 327