Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score =  222 bits (566), Expect = 2e-62
 Identities = 113/280 (40%), Positives = 181/280 (64%), Gaps = 1/280 (0%)

Query: 36  VAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRM 95
           +A  G  E  REE +   +     Q   +E G S +      V   ++  R    A+K M
Sbjct: 392 LAARGWKEFAREESNTIREIRQEIQNLSTETGIS-IAEFRRIVSMVQKGEREARIAKKEM 450

Query: 96  IESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 155
           +E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I
Sbjct: 451 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 510

Query: 156 ERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLR 215
            R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V K+L+
Sbjct: 511 TRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLK 570

Query: 216 LNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVL 275
           + +   S++TP+G + D  L D + D +   P  +    ++RE+    L  L P+++ VL
Sbjct: 571 IAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVL 630

Query: 276 ARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
             RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 631 RMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 7   VTKVEEFDFEDEALEVLETDAELTSDE--ELVAVEGASEDVREEFDASAKSLDATQMYLS 64
           +  +E+ D E+ A    + D++    E  EL    G +    ++ + + ++ D  +MYL 
Sbjct: 75  INVIEDEDAEEAAPAEDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLR 134

Query: 65  EIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL-VVKISRRYSNRGLALL 118
           E+G   LL+ E E+  A+R   G E     + ES L    + I R   N G  LL
Sbjct: 135 EMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLL 189