Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score =  213 bits (543), Expect = 8e-60
 Identities = 111/278 (39%), Positives = 177/278 (63%), Gaps = 3/278 (1%)

Query: 41  ASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIE 97
           AS D++   +     + A Q  +++I     L   +    ++R   G+  AR   K M+E
Sbjct: 337 ASPDIKGHLEKVRPDVLAFQQKIADIEKELGLNVIDIKDISKRMAIGEAKARRAKKEMVE 396

Query: 98  SNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 157
           +NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R
Sbjct: 397 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 456

Query: 158 ALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLN 217
           ++ +Q RTIR+P+H+++ +N   R +R+L Q +  EPTPEE+   L+     V K+L++ 
Sbjct: 457 SIADQARTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIA 516

Query: 218 ERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLAR 277
           +   S++TPIG D D  L D + D +   P  +   + ++E+    L+ L  ++ +VL  
Sbjct: 517 KEPISMETPIGDDEDSHLGDFIEDQNITSPVDAATSEGLKEATREVLENLTEREAKVLKM 576

Query: 278 RFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 577 RFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 614



 Score = 31.2 bits (69), Expect = 7e-05
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 15  FEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTA 74
           FED A       A+  ++EE  AV  + E+         ++ D  +MY+ E+G   LLT 
Sbjct: 69  FEDNA-----EAADEVAEEEAAAVLASVEN------EPGRTTDPVRMYMREMGTVELLTR 117

Query: 75  EEEVLYARRALRG 87
           E E+  A+R   G
Sbjct: 118 EGEISIAKRIEEG 130